BOLD indicates a graduate student at the time of publication UNDERLINE indicates an undergraduate student at the time of publication
2023
C. M. Small, E. A. Beck, M. C. Currey, H. F. Tavalire, S. Bassham and W. A. Cresko. 2023. Host genomic variation shapes gut microbiome diversity in threespine stickleback fish. mBio 2023 Pages e0021923
J. A. Searcy, C. C. Cioffi, H. F. Tavalire, E. L. Budd, W. A. Cresko, D. S. DeGarmo and L. D. Leve. 2023. Reaching Latinx Communities with Algorithmic Optimization for SARS-CoV-2 Testing Locations. Prev Sci 2023 Vol. 24 Issue 6 Pages 1249-1260
B. Ramesh, C. M. Small, H. Healey, B. Johnson, E. Barker, M. Currey, Bassham, S. Myers, M. Cresko, W. A. Jones, A. G. Improvements to the Gulf pipefish Syngnathus scovelli genome. GigaByte 2023 Vol. 2023 Pages gigabyte76
S. I. Frantz, C. M. Small, W. A. Cresko and N. D. Singh. 2023. Ovarian transcriptional response to Wolbachia infection in D. melanogaster in the context of between-genotype variation in gene expression. G3 (Bethesda) 2023 Vol. 13 Issue 5
M. C. Currey, C. Walker, S. Bassham, H. M. Healey, E. A. Beck and W. A. Cresko. 2023. Genome-wide analysis facilitates estimation of the amount of male contribution in meiotic gynogenetic three-spined stickleback (Gasterosteus aculeatus). J Fish Biol 2023 Vol. 102 Issue 4 Pages 844-855
2022
C. M. Small, H. M. Healey, M. C. Currey, E. A. Beck, J. Catchen, A. S. P. Lin Cresko, W. A., Bassham, S. 2022. Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes. Proc Natl Acad Sci U S A 2022 Vol. 119 Issue 26 Pages e2119602119
Healey, H.M., S. Bassham and W.A. Cresko. Single-cell Iso-Sequencing enables rapid genome annotation for scRNAseq analysis. Genetics. 220(3), iyac017 [reprint]
A. M. Petersen, C. M. Small, Y. L. Yan, C. Wilson, P. Batzel, R. A. Bremiller, Buck, C. L. von Hippel, F. A., Cresko, W. A., Postlethwait, J. H.. 2022. Evolution and developmental expression of the sodium-iodide symporter (NIS, slc5a5) gene family: Implications for perchlorate toxicology. Evol Appl 2022 Vol. 15 Issue 7 Pages 1079-1098
D. S. DeGarmo, S. De Anda, C. C. Cioffi, H. F. Tavalire, J. A. Searcy, E. L. Budd, Hawley McWhirter, E., Mauricio, A. M., Halvorson, S., Beck, E. A., Fernandes, L., Currey, M. C., Ramirez Garcia, J., Cresko, W. A., Leve, L. D. 2022. Effectiveness of a COVID-19 Testing Outreach Intervention for Latinx Communities: A Cluster Randomized Trial. JAMA Netw Open 2022 Vol. 5 Issue 6 Pages e2216796
E. L. Budd, E. H. McWhirter, S. De Anda, A. M. Mauricio, M. V. Mueller, C. C. Cioffi, Nash, A., Van Brocklin, K., Yarris, K., Jackson, A., Terral, H., Garcia, J. I. R., Juntos Podemos Community Scientific Advisory Board, Cresko, W. A., DeGarmo, D. S., Leve, L. D.. 2022. Development and design of a culturally tailored intervention to address COVID-19 disparities among Oregon’s Latinx communities: A community case study. Front Public Health 2022 Vol. 10 Pages 962862
E. A. Beck, H. M. Healey, C. M. Small, M. C. Currey, T. Desvignes, W. A. Cresko and J. H. Postlethwait. 2022. Advancing human disease research with fish evolutionary mutant models. Trends Genet 2022 Vol. 38 Issue 1 Pages 22-44.
E. A. Beck, S. Bassham and W. A. Cresko. Extreme intraspecific divergence in mitochondrial haplotypes makes the threespine stickleback fish an emerging evolutionary mutant model for mito-nuclear interactions. Front Genet 2022 Vol. 13 Pages 925786.
S. Anda, E. L. Budd, S. Halvorson, A. M. Mauricio, E. H. McWhirter, C. C. Cioffi, Garcia, J. I. R., Cresko, W. A., Leve, L. D., DeGarmo, D. S.. 2022. Effects of a Health Education Intervention for COVID-19 Prevention in Latinx Communities: A Cluster-Randomized Controlled Trial. Am J Public Health 2022 Vol. 112 Issue S9 Pages S923-S927
2021
Tavalire, H. F., D. M. Christie, L. D. Leve, N. Ting, W. A. Cresko, and B. J. M. Bohannan. 2021. Shared Environment and Genetics Shape the Gut Microbiome after Infant Adoption. mBio 12.
Rengefors, K., R. Gollnisch, I. Sassenhagen, K. Harnstrom Aloisi, M. Svensson, K. Lebret, D. Certnerova, W. A. Cresko, S. Bassham, and D. Ahren. 2021. Genome-wide single nucleotide polymorphism markers reveal population structure and dispersal direction of an expanding nuisance algal bloom species. Mol Ecol 30:912-925.
2021 • O’Connor, C. H., K. L. Sikkink, T. C. Nelson, J. L. Fierst, W. A. Cresko, and P. C. Phillips. 2021. Complex pleiotropic genetic architecture of evolved heat stress and oxidative stress resistance in the nematode Caenorhabditis remanei. G3 (Bethesda) 11.
2021 • Fuiten, A. M., and W. A. Cresko. 2021. Evolutionary divergence of a Hoxa2b hindbrain enhancer in syngnathids mimics results of functional assays. Dev Genes Evol.
M. Stervander and W. A. Cresko. 2021. A highly contiguous nuclear genome assembly of the mandarinfish synchiropus splendidus (Syngnathiformes: Callionymidae). G3 (Bethesda) 2021
2020
2020 • Beck, E.A., M.C. Currey, C.M. Small, and W.A. Cresko. QTL Mapping of Intestinal neutrophil variation in threespine stickleback reveals possible gene targets connecting intestinal inflammation and systemic health. G3. 10(2): 613-622. [reprint]
2020 • Galloway, J., W.A. Cresko, P. Ralph. A few stickleback suffice for the transportation of alleles to new lakes. G3. 10(2): 505-514. [reprint]
2019
2019 • Tavalire, H., W.A. Cresko, L. Leve. Determining the contributions of stress and inflammation to child health: harnessing the complementary strengths of fish models and human subjects research. Behaviour Genetics. 49(6): 504-505
2019 • Nelson, T.C., J.G. Crandall, C.M. Ituarte, J.M. Catchen, and W.A. Cresko. Selection, linkage, and population structure interact to shape genetic variation among threespine stickleback genomes. Genetics. 212: 1367-1382.
2019 • Sikkink, K.L., R.M. Reynolds, C.M. Ituarte, W.A. Cresko, and P.C. Phillips. Environmental and evolutionary drivers of the modular gene regulatory network underlying phenotypic plasticity for stress resistance in the nematode Caenorhabditis remanei. G3. 9(3): 969-982.
2019 • Small, C. M., M. Currey, E.A. Beck, S. Bassham, and W.A. Cresko. Highly reproducible 16S sequencing facilitates measurement of host genetic influences on the stickleback gut microbiome. mSystems. 4(4): e00331-19.
2019 • Currey, M.C., S.L. Bassham, and W.A. Cresko. Genetic divergence outpaces phenotypic divergence among threespine stickleback populations in old freshwater habitats. Biol. J. Linnean Society. 128(2): 415-434.
2019 • Steury, R. A., and Currey M.C., W.A. Cresko, and B.J.M., Bohannan. Population genetic divergence and environment influence the gut microbiome in Oregon threespine stickleback. Genes. 10(7): 484.
2019 • O’Connor C.H., K.L. Sikkink, T.C. Nelson, J. Fierst, W.A. Cresko, and P.C. Phillips. Complex pleiotropic genetic architecture of evolved heat stress and oxidative stress resistance in the nematode Caenorhabditis remanei. bioRxiv: 515320.
2018
2018 • Bassham, S., J. Catchen, E. Lescak, F.A. von Hippel, and W.A. Cresko. Repeated selection of alternatively adapted haplotypes creates sweeping genomic remodeling in stickleback. Genetics. 209(3): 921-939.
2018 • Nelson, T.C., and W.A. Cresko. Ancient genomic variation underlies repeated ecological adaptation in young stickleback populations. Evolution Letters. 2(1): 9-21.
2018 • Leve, L.D., J.M. Neiderhiser, G.T. Harold, M.N. Natsuaki, B.J. Bohannan, and W.A. Cresko. Naturalistic Experimental Designs as Tools for Understanding the Role of Genes and the Environment in Prevention Research. Prevention Science. (19) 1: 68-78. [reprint]
2017
2017 • Currey, M., S. Bassham, S. Perry , and W.A. Cresko. Developmental timing differences underlie armor loss across threespine stickleback populations. Evolution and Development. 19(6): 231-243.
2017 • Small C.M., K. Milligan-Myhre, S. Bassham, K. Guillemin, and W.A. Cresko. Host Genotype and Microbiota Contribute Asymmetrically to Transcriptional Variation in the Threespine Stickleback Gut. Genome Biol Evol. 9(3): 504-20.
2017 • Gardell A.M., F.A. von Hippel, E.M. Adams, D.M. Dillon, A.M. Petersen, J.H. Postlethwait, W.A. Cresko, and C.L. Buck. Exogenous iodide ameliorates perchlorate-induced thyroid phenotypes in threespine stickleback. Gen Comp Endocrinol. 243: 60-9. [reprint]
2017 • Lescak E.A., M.A. Wund, S. Bassham, J. Catchen, D. Prince, R. Lucas, G. Dominguez, F.A. von Hippel, and W.A. Cresko. Ancient three-spined stickleback (Gasterosteus aculeatus) mtDNA lineages are not associated with phenotypic or nuclear genetic variation. Biol. J. Linnean Society. 122(3): 579-588.
2016
2016 • Small, C., S. Bassham, J. Catchen, A. Amores, A.M. Fuiten, R.S. Brown , A.G. Jones, and W.A. Cresko. The genome of the Gulf pipefish enables understanding of evolutionary innovations. Genome Biology. 17(1): 58-65. [reprint]
2016 • Milligan-Myhre, K.A., C.M. Small, E.K. Mittge, M. Agarawal, M. Currey, W.A. Cresko, and K. Guillemin. Innate immune responses to gut microbiota differ between oceanic and freshwater threespine stickleback populations. Disease Models & Mechanisms. 9(2): 187-98. [reprint]
2016 • Petersen, A., N. Earp , M. Redmond , J.H. Postlethwait, F.A. von Hippel, C.L. Buck and W.A. Cresko. Perchlorate exposure reduces primary germ cell number in female stickleback. PLoS One. 11(7): e0157792. [reprint]
2015
2015 • Lescak, E., S. Bassham, J. Catchen, O. Gelmond, F.A. von Hippel, M.L. Sherbick, and W.A. Cresko. Evolution of Stickleback in 50 years on Earthquake-Uplifted Islands. Proc. Natl. Acad. Sci. USA. 112 (52): E7204-E7212.
2015 • Allendorf, F.W., S. Bassham, W.A. Cresko, M.T. Limborg, L.W. Seeb, and J.E. Seeb. Response to May and Delany: We Never Said Wright was Wrong. J. Hered. 106: 767-768.
2015 • Sikkink, K.L., R.M. Reynolds, W.A. Cresko, and P.C. Phillips. Environmentally induced changes in correlated responses to selection reveal variable pleiotropy across a complex genetic network. Evolution. 69: 1128-1142. [reprint]
2015 • Petersen, A.M., D. Dillon, R.R. Bernhardt, R. Torunsky, J.H. Postlethwait, F.A. von Hippel, C. Loren Buck, and W.A. Cresko. Perchlorate disrupts embryonic androgen synthesis and reproductive development in threespine stickleback without changing whole-body levels of thyroid hormone. Gen. Comp. Endocrinology. 210: 130-144. [reprint]
2015 • Lescak, E.A., R.W. Marcotte, L.A. Kenney, F.A. Hippel, W.A. Cresko, M.L. Sherbick, J.J. Colgren, and J. Andrés López. Admixture of ancient mitochondrial lineages in three‐spined stickleback populations from the North Pacific. Journal of Biogeography. 42: 532-539. [reprint]
2015 • Furin, C.G., F.A. von Hippel, J. Postlethwait, C.L. Buck, W.A. Cresko, and T.M. O’Hara. Developmental timing of perchlorate exposure alters threespine stickleback dermal bone. Gen. Comp. Endocrinology. 219: 36-44.
2015 • Gardell, A.M., D.M. Dillon, L.C. Smayda, F.A. von Hippel, W.A. Cresko, J.H. Postlethwait, and C.L. Buck. Perchlorate exposure does not modulate temporal variation of whole-body thyroid and androgen hormone content in threespine stickleback. Gen. Comp. Endocrinology. 219: 45-52. [reprint]
2015 • Allendorf, F.W., S. Bassham, W.A. Cresko, M.T. Limborg, L.W. Seeb, and J.E. Seeb. Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes. J. Hered. 106: 217-227. [reprint]
2015 • Furin, C.G., F.A. von Hippel, J.H. Postlethwait, C.L. Buck, W.A. Cresko, and T.M. O’Hara. Developmental timing of sodium perchlorate exposure alters angiogenesis, thyroid follicle proliferation and sexual maturation in stickleback. Gen. Comp. Endocrinology. 219: 24-35. [reprint]
2014
2014 • Sikkink, K.L., R.M. Reynolds, C.M. Ituarte , W.A. Cresko, and P.C. Phillips. Rapid evolution of phenotypic plasticity and shifting thresholds of genetic assimilation in the nematode Caenorhabditis remanei. G3: Genes, Genomes, Genetics. 4(6): 1103-1112. [reprint]
2014 • Sikkink, K.L., C.M. Ituarte , R.M. Reynolds, W.A. Cresko, and P.C. Phillips. The transgenerational effects of heat stress in the nematode Caenorhabditis remanei are negative and rapidly eliminated under direct selection for increased stress resistance in larvae. Genomics. 104: 438-446. [reprint]
2014 • Voelker, R.B., W.A. Cresko, and J.A. Berglund. Computational approaches to mine publicly available databases. Methods Mol. Biol. 1126:325-340. [reprint]
2014 • Jamniczky, H.A., E.E. Harper, R. Garner, W.A. Cresko, P.C. Wainwright, B. Hallgrímsson, and C.B. Kimmel. Association between integration structure and functional evolution in the opercular four‐bar apparatus of the threespine stickleback, Gasterosteus aculeatus (Pisces: Gasterosteidae). Biological Journal of the Linnean Society. 111: 375-390.
2013
2013 • Catchen, J., S. Bassham, T. Wilson, M. Currey, C. O’Brien, Q. Yeates and W.A. Cresko. The population structure and recent colonization history of Oregon threespine stickleback determined using RAD-seq. Molecular Ecology. 22(11): 2864–2883. [reprint]
2013 • Catchen, J., P. Hohenlohe, S. Bassham, A. Amores, and W.A. Cresko. Stacks: an analysis tool set for population genomics. Molecular Ecology. 22(11): 3124-3140. [reprint]
2013 • Shen, Y., T. Garcia, V. Pabuwal, M. Boswell, A. Pasquali, I. Beldorth, W. Warren, M. Schartl, W.A. Cresko, and R.B. Walter. Alternative strategies for development of a reference transcriptome for quantification of allele specific expression in organisms having sparse genomic resources. Comp. Biochem. Physiol. Part D Genomics Proteomics. 8:11-16.
2013 • Willette, D., F. Allendorf, P.H. Barber, D.J. Barshis, K.E. Carpenter, E.D. Crandall, W.A. Cresko, I. Fernandez-Silva, M.V. Matz, E. Meyer, M.D. Santos, L.W. Seeb, and J.E. Seeb. So, you want to use next-generation sequencing in marine systems? Insight from the Pan-Pacific Advanced Studies Institute. Bulletin of Marine Science. 90(1): 79-122.
2013 • O’Brien, C., L. Unruh , C. Zimmerman, W.E. Bradshaw, C.M. Holzapfel, and W.A. Cresko. Geography of the circadian gene clock and photoperiodic response in western North American populations of the three-spined stickleback Gasterosteus aculeatus. J. Fish. Biol. 82(3): 827–839. [reprint]
2012
2012 • Bradshaw, W.E., K.J. Emerson, J.M. Catchen, W.A. Cresko, and C.M. Holzapfel. Footprints in time: comparative quantitative trait loci mapping of the pitcher-plant mosquito, Wyeomyia smithii. Proceedings of the Royal Society B: Biological Sciences. vol. 279(1747): 4551-4558. Proceedings of the Royal Society B Biological Sciences, 279(1747), 4551-8. [reprint]
2012 • Hohenlohe P.A., J. Catchen, and W.A. Cresko. Population genomic analysis of model and non-model organisms using sequenced RAD tags. in Population Genomics: Methods and Protocols, F. Pompanon and A. Bonin, eds. Humana Press. 888: 235–260.
2012 • Kimmel, C.B., K. McGuigan, P.C. Phillips, B. Ullmann, M. Currey, F.A. von Hippel, B.K. Kristjánsson, O. Gelmond, and W.A. Cresko. Independent axes of genetic variation and parallel evolutionary divergence of opercle bone shape in threespine stickleback. Evolution. 66(2): 419–434
2012 • Hohenlohe, P.A., S. Bassham, M. Currey and W.A. Cresko. Extensive linkage disequilibrium in threespine stickleback and its importance for parallel adaptation and ecological speciation. Philosophical Transactions of the Royal Society of London. 367: 395–408. [reprint]
2012 • Kimmel C. B., P.A. Hohenlohe, B. Ullmann , M. Currey, and W.A. Cresko. Developmental dissociation in morphological evolution of the stickleback opercle. Evol. Dev. 14: 326–337. [reprint]
2012 • O’Brien C.S., R. Bourdo, W.E. Bradshaw, C.M. Holzapfel and W.A. Cresko. Conservation of the photoperiodic neuroendocrine axis among vertebrates: evidence from the teleost fish, Gasterosteus aculeatus. General Comparative Endocrinology, 178(1), 19-27. [reprint]
2012 • Hohenlohe, P.A., J. Catchen, W.A. Cresko. Population genomic analysis of model and non-model organisms using sequenced RAD tags. in Population Genomics: Methods and Protocols, F. Pompanon and A. Bonin, eds. Humana Press. 888: 235–260. [reprint]
2012 • Shen, Y., Garcia, T., Pabuwal, V., Boswell, M., Pasquali, A., Beldorth, I., Warren, W., Schartl, M., Cresko, W. A., & Walter, R. B. (2012). Alternative strategies for development of a reference transcriptome for quantification of allele specific expression in organisms having sparse genomic resources. Comparative Biochemistry and Physiology Part D:Genomics Proteomics, 8(1), 11-6. [reprint]
2011
2011 • Etter, P., J. Preston, S. Bassham, W.A. Cresko, and E.A. Johnson. SNP discovery and de novo assembly using RAD paired-end sequencing. PLoS One. 6(4).
2011 • Nishimura, N., D. Heins, R. Anderson, I. Barber and W.A. Cresko. Cryptic coevolution of Schistocephalus parasites and stickleback hosts revealed by molecular genetic analysis. PLoS One. 6(7): e22505. [reprint]
2011 • Catchen, J. M., A. Amores, P. Hohenlohe, W. A. Cresko, and J. H. Postlethwait. Stacks: building and genotyping loci de novo from short-read sequences. (G3) Genes, Genomes and Genetics. 1: 171-182. [reprint]
2011 • Hohenlohe, P.A., S.J. Amish, J.M. Catchen, F.W. Allendorf, and G. Luikart. Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout. Molecular Ecology 11 Suppl 1. (March): 117-122. [reprint]
2011 • Allendorf, F.W., P.A. Hohenlohe, and G. Luikart. Genomics and the future of conservation genetics. Nature Reviews Genetics. 11(10): 697-709.
2011 • Davey, J.W., P.A. Hohenlohe, P.D. Etter, J.Q. Boone, J.M. Catchen, and M.L. Blaxter. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nature Reviews Genetics 12(7): 499–510.
2011 • Etter, P., S. Bassham, P. Hohenlohe, E. Johnson and W.A. Cresko. SNP Discovery and Genotyping for Evolutionary Genetics using RAD Sequencing. pp. 157-178 in Molecular Methods for Evolutionary Genetics, Humana Press edited by V. Orgogozo and M. Rockman [reprint]
2011 • Kimmel, C. B., Cresko, W. A., Phillips, P. C., Ullmann, B., Currey, M., von Hippel, F., Kristjánsson, B. K., Gelmond, O., & McGuigan, K. (2011). Independent axes of genetic variation and parallel evolutionary divergence of opercle bone shape in threespine stickleback. Evolution, 66(2), 419-34. [reprint]
2011 • Amores, A., Catchen, J., Ferrara, A., Fontenot, Q., & Postlethwait, J. 2011. Genome evolution and meiotic maps by massively parallel DNA sequencing: Spotted gar, an outgroup for the teleost genome duplication. Genetics, 188, 799–808. [reprint]
2011 • Davey, J., Hohenlohe, P., Etter, P., Boone, J., Catchen, J., & Blaxter, M. (2011). Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nature Reviews Genetics, 12, 499-510. [reprint]
2011 • McGuigan, K., Nishimura, N., Currey, M., Hurwit, D. & Cresko, W. A. (2011). Cryptic Genetic Variation and Body Size Evolution in Threespine Stickleback. Evolution, 65, 1203–1211. [reprint]
2011 • Etter, P. D., Preston, J. L., Bassham, S., Cresko, W. A., & Johnson, E. A. (2011). Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads. PLoS ONE, 6(4), e18561. [reprint]
2010
2010 • McGuigan, K., N. Nishimura, M. Currey, D. Hurwit and W.A. Cresko. Quantitative genetic variation in static allometry in threespine stickleback. Integrative and Comparative Biology. 50: 1067-1080. [reprint]
2010 • Hohenlohe, P.A., P.C. Phillips, and W.A. Cresko. Using Population Genomics to Detect Selection in Natural Populations: Key Concepts and Methodological Considerations. International Journal of Plant Sciences. 171(9): 1059-1071. [reprint]
2010 • Hohehlohe, P., S. Bassham, P. Etter, N. Stiffler, E. Johnson and W.A. Cresko. Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD tags. PLoS Genetics 6(2):e1000862. (Faculty of 1000 must read) [reprint]
2010 • Emerson, K.J, C.R. Merz, J.M. Catchen, P.A. Hohenlohe, W.A. Cresko, W.E. Bradshaw, and C.M. Holzapfel. 2010. Resolving postglacial phylogeography using high-throughput sequencing. Proc. Natl. Acad. Sci. USA. 107(37): 16196-16200.
2010 • McGuigan, K., N. Nishimura, M. Currey, D. Hurwit and W.A. Cresko. Quantitative genetic variation in static allometry in threespine stickleback. Integrative and Comparative Biology. 50(6): 1067-1080.
2010 • von Hippel, F.A. and W.A. Cresko. Behavioural genetics, phylogenetics and speciation. In: Tinbergen’s Legacy in Behaviour:Sixty Years of Landmark Stickleback Papers. pp.459-467. Brill, Leiden.
2010 • Allendorf, F. W., Hohenlohe, P. A., & Luikart, G. (2010). Genomics and the future of conservation genetics. Nature Reviews Genetics, 11, 697-709. [reprint]
2010 • Hohenlohe, P. A., & Arnold, S. J. (2010). The dimensionality of mate choice, sexual isolation, and speciation. Proceedings of the National Academy of Sciences, 107(38), 16583-16588. [reprint].
2010 • Emerson, K. J., Merz, C. R., Catchen, J. M., Hohenlohe, P. A., Cresko, W. A., Bradshaw, W. E., & Holzapfel, C. M. (2010). Out of Appalachia: Resolving post-glacial phylogeography using high-throughput sequencing. Proceedings of the National Academy of Sciences, 107(37), 16196-200. [reprint]
2009
2009 • Yeates-Burghart, Q. S., O’Brien, C., Cresko, W. A., Holzapfel, C. M., & Bradshaw, W. E. (2009). Latitudinal variation in photoperiodic response of the three-spined stickleback Gasterosteus aculeatus in western North America. Journal of Fish Biology, 75(8), 2075-81. [reprint]
2009 • Albertson, R. C., Cresko, W., Detrich, H. W., & Postlethwait, J. H. (2009). Evolutionary mutant models for human disease. Trends in Genetics, 25(2), 74-81. [reprint]
2008
2008 • Cresko, W.A. Special issue on stickleback behavior and evolution: Preface. Behaviour. 145: 409-411.
2008 • Cresko, W. A. (2008). Armor Development and Fitness. Science, 322(5899), 204-206. [reprint]
2008 • Kimmel, C. B., Aguirre, W. E., Ullmann, B., Currey, M., & Cresko, W. A. (2008). Allometric change accompanies opercular shape evolution in Alaskan threespine sticklebacks. Behaviour, 145(4-5), 669-691. [reprint]
2008 • Lewis, Z. R., McClellan, M. C., Postlethwait, J. H., Cresko, W. A., & Kaplan, R. H. (2008). Female-specific increaes in primordial germ cells marks sex differntiation in threespine stickleback (Gasterosteus aculeatus). Journal of Morphology, 269(8), 909-921. [reprint]
2008 • Baird, N. A., Eter, P. D., Atwood, T. S., Currey, M. C., Shiver, A. L., Lewis, A., Selker, E. U., Cresko, W. A., & Johnson, E. A. (2008). Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One, 3(10), e3376. [reprint]
2008 • Calcott, B., Balcan, D., & Hohenlohe, P. A. (2008). A publish-subscribe model of genetic networks. PLoS ONE, 3(9), e3245. [reprint]
2008 • Stinchcombe, J. R., Agrawal, A. F., Hohenlohe, P. A., Arnold, S. J., & Blows, M. W. (2008). Estimating non-linear selection gradients using quadratic regression coefficients: double or nothing? Evolution, 62(9), 2435-2440. [reprint]
2008 • Hohenlohe, P. A., & Arnold, S. J. (2008). MIPoD: A hypothesis-testing framework for microevolutionary inference from patterns of divergence. American Naturalist, 171(3), 366-385. [reprint]
2007
2007 • Miller, M., Dunham, J., Amores, A., Cresko, W. A., & Johnson, E. (2007). Rapid and cost-effective polymorphism identification and genotyping using Restriction site Associated DNA (RAD) markers. Genome Research, 17(2), 240-248. [reprint]
2007 • Jovelin, R. He, X., Amores, A., Yan, Y., Cresko, W. A., & Postlethwait, J. H. (2007). FGF8 duplication and functional divergence in the ray-fin fish lineage.Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 308, 730-743. [reprint]
2007 • Cresko, W. A., McGuigan, K. L., Phillips, P. C., & Postlethwait, J. H. (2007). Studies of threespine stickleback developmental evolution: progress and promise. Genetica, 129(1), 105-126. [reprint]
2006
2006 • Bernhardt, R.R., F.A. von Hippel, and W.A. Cresko. Perchlorate induces hermaphroditism in threespine stickleback. Environmental Toxicology and Chemistry. 25(8): 2087-2096.
2005
2005 • Tanaka, M., L.A. Hale, A. Amores, Y.L. Yan, W.A. Cresko, T. Suzuki, and J.H. Postlethwait. Developmental genetic basis for the evolution of pelvic fin loss in the pufferfish Takifugu rubripes. Developmental Biology. 281: 227-239.
2005 • Force, A., Cresko, W. A., Pickett, F. B., Proulx, S. R., Amemiya, C., & Lynch, M. (2005). The origin of subfunctions and modular gene regulation. Genetics, 170, 433-446. [reprint]
2005 • Baker, J., Cresko, W. A., Foster, S., & Heins, D. (2005). Life History differentiation of benthic and limnetic ecotypes in a polytypic population of threespine stickleback, Gasterosteus aculeatus. Evolutionary Ecology Research, 7, 121-131. [reprint]
2005 • Kimmel, C. B., Ullmann, B., Walker, C., Wilson, C., Currey, M., Phillips, P. C., Bell, M. A., Postlethwait, J. A., & Cresko, W. A. (2005). Evolution and development of facial bone morphology in threespine sticklebacks. Proceedings of the National Academy of Sciences of the United States of America, 102(16), 5791-6. [reprint]
2004
2004 • Force, A. G., Cresko, W. A., & Pickett, F. (2004). Informational accretion, gene duplication and the mechanisms of genetic module parcellation, in Schlosser, G., & Wagner, G. P. (Eds.). Modularity in Development and Evolution. Chicago: University of Chicago Press. 350-375.
2004 • Postlethwait, J.H., A. Amores, W.A. Cresko, A. Singer, and Y. Yan. Subfunction partitioning, the teleost radiation and the annotation of the human genome. Trends in Genetics. 20(10): 481-490.
2004 • Cresko, W. A., Amores, A., Wilson, C., Murphy, J., Currey, M., Phillips, P., Bell, M., Kimmel, C., & Postlethwait, J. (2004). Parallel genetic basis for repeated evolution of armor loss in Alaskan threespine stickleback populations. Proceedings of the National Academy of Sciences of the United States of America, 101, 6050-6055. [reprint]
2003
2003 • Cresko, W.A., Y. Yan, D. Baltrus, A. Amores, A. Singer, A. Rodriguez-Mari, and J. Postlethwait. Genome Duplication, Subfunction Partitioning, and Lineage Divergence: Sox9 in Stickleback and Zebrafish. Devp. Dyn. 228: 480-489.
2003 • Cresko, W. A., Yan, Y., Baltrus, D., Amores, A., Singer, A., Rodriguez-Mari, A., & Postlethwait, J. (2003). Genome Duplication, Subfunction Partitioning, and Lineage Divergence: Sox9 in Stickleback and Zebrafish. Developmental Dynamics, 228, 480-489. [reprint]
2000 and earlier
2000 • Cresko, W.A. The Ecology and Geography of Speciation: A Case Study Using an Adaptive Radiation of Threespine Stickleback in Alaska. Clark University, Worcester, MA.
1998 • Foster, S. A., Scott, R., & Cresko, W. A. (1998). Nested biological variation and speciation. Philosophical Transactions of the Royal Society London B Biological Sciences, 353, 207-218. [reprint]
1997 • Roosenburg, W.M., W.A. Cresko, M. Modesitte, and M.B. Robbins. Diamondback terrapin (Malaclemys terrapin) mortality in crab pots. Conservation Biology. 11: 1166-1172.
1996 • Cameron, S., J. Whitfield, C. Hulslander, W.A. Cresko, S. Isenberg, and R. King. Nesting biology and foraging patterns of the solitary bee Melissodes rustica (Hymenoptera: Apidae) Journal of the Kansas Entomological Society. 69(4): 260-273.
1996 • Cresko, W. A., & Baker, J. A. (1996). Two morphotypes of lacustrine threespine stickleback, Gasterosteus aculeatus, in Benka Lake, Alaska. Environmental Biology of Fishes, 45, 343-350.
1996 • Foster, S.A., W.A. Cresko, K. Johnson, M. Tlusty, and H. Willmott. Levels of homoplasy in behavioral characters. in Sanderson, M. J. and L. Hufford (eds.) Homoplasy: The Recurrence of Similarity in Evolution. Academic Press.
Press and Review Article Coverage of our Research
2018 • How an earthquake shook up stickleback genomes. Genes to Genomes GSA Blog Website
2017 • Hold your (sea)horses – here’s the pipefish genome. BiomedCentral Website
2016 • Andrews et al. Harnessing the power of RADseq for ecological and evolutionary genomics. Nature Reviews Genetics Website
2016 • Earthquakes and rapid evolution. The Molecular Ecologist Website
2015 • Copenhaver, G.P. and G.S. Barsh. A decad(e) of reasons to contribute to a PLoS community-run Journal. - A commentary on our 2010 paper in PloS Genetics (Hohenlohe, Bassham et al.) that was chosen one of the 10 most important papers (out of 5000) in the first decade of PLoS Genetics.Website
2015 • Interview on Oregon Public Broadcasting’s Think Out Loud about stickleback evolution. OPB Website
2015 • Small fish takes evolution fast track - Interview with Dr. Susie Bassham. Scientific American Website
2015 • Small fish species evolved rapidly following 1964 Alaska earthquake. ScienceDaily Website
2015 • Fang, J. Catastrophic Earthquake Drove Fish Evolution In Just 50 Years. IFL Science Website
2015 • Kiger, P.J. Earthquake forced rapid evolution in fish. Discovery News Website
2015 • Small fish species evolved rapidly following 1964 Alaska earthquake. Phys.Org Website
2015 • Big Earthquake jolted fish into fast evolution. Futurity Website
2015 • Mathewson, S. Stickleback fish evolved rapidly to living in freshwater ponds following major earthquake. Nature World News Website
2013 • Julian Catchen helps us dig into Stacks. The Molecular Ecologist Website
2011 • RAD-Tagging is demystifying genome sequencing. NewsWise Website
2010 • Genomic Study IDs Parallel Adaptations in Independent Stickleback Populations. GenomeWeb Website
2010 • Stickleback Genomes Shining Bright Light on Evolution. ScienceDaily Website
2010 • News from the field: Stickleback Genomes Shining Bright Light on Evolution. NSF Press Release Website
2010 • The parallel lives of threespine stickleback. Discover Magazine Online Website
2010 • Stapley, J., J. Reger, P. G. D. Feulner, C. Smadja, J. Galindo, R. Ekblom, C. Bennison, A. D. Ball, A. P. Beckerman and J. Slate. Adaptation Genomics: the next generation. Trends in Ecology and Evolutionary Biology. 25. 705-712. Website
2010 • News from the field: Genetic Structure of First Animal to Show Evolutionary Response to Climate Change Determined. NSF Press Release Website
2010 • Mosquitoes: Genetic Structure of First Animal to Show Evolutionary Response to Climate Change Determined. ScienceDaily Website
2010 • Genomic Study IDs Parallel Adaptations in Independent Stickleback Pops. GenomeWeb Daily Website
2010 • Stickleback Genomes Shining Bright Light on Evolution. ScienceDaily Website
2009 • Maher, B. Biology’s next top model. Nature 458; 695-698. Website
2008 • Fitness in a changing world. NSF Press Release Website
2006 • Platt, J. E. Macroevolution: Alive and well in sticklebacks. The American Biology Teacher Website
2006 • Reproductive Toxicity: New Take on Perchlorate Effects. Environmental Health Perspectives Website
2006 • Raloff, J. A. Macho moms: Perchlorate pollutant masculinizes fish. Science News Website
2004 • Foster, S. A., and J. A. Baker. Evolution in parallel:new insights from a classic system. Trends in Ecology and Evolution 19; 456-459. Website
2004 • Pennisi, E. Evolutionary Biology, Changing fish’s bony armor in the wink of a gene. Science. 304; 1737-1739. Website
2004 • Secko, D., Big cross lands sticklebacks in the spotlight. The Scientist 18(21): 16. Website
2004 • Tickle, C. and N. Cole. Morphological Diversity: Taking the spine out of three-spine stickleback. Current Biology 14(11): 422-424. Website